PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG122800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 191aa    MW: 20963.2 Da    PI: 7.8504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG122800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-131258455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Pavir.9NG122800.1.p 12 DHILAERKRRENLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 58
                         5999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-171269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-101358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-181376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-131362No hitNo description
SMARTSM003538.4E-151463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTNSMCRGIS RDHILAERKR RENLSQRFIA LSKIVPGLKK MDKASVLGDA IKYVKQLQDQ  60
VKGLEDEARR RPVEAAVLVK KSQLSADDDD GSSCDENFVG TEAAGTLPEI EARVSDRTVL  120
IRIHCENRKG VLIAALSEVE CLGLTIMNTN VLPFTTSTLD ITVMAMAGDD FCMSVKDIVK  180
KLNQAFKSSF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621ERKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.105950.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankEU9565960.0EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.11e-121PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0724e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLK4ABY61e-121K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein